![]() You will find a friendly community with many experts on both scientific and technical topics. I don't know what other functions are relevant. The recommended way to get help with ImageJ is to use the Image.sc Forum. (for example, exact words depend on which color mode is chosen)īoth of which seem to make sense. Welcome to the Scientific Community Image Forum at This forum’s focus is software-oriented aspects of scientific imaging, particularly (but not limited to) image analysis, processing, acquisition, storag. This one is pretty straightforward though: in Analyze > Set Measurements, there is a checkbox Limit To Threshold that controls the behavior you’re describing. ![]() The Log says "Warning: Data has too many channels for Colorized color" As jennifer said, is the place to ask questions about ImageJ. However that is quite cumbersome as it is not straightforward to determine which channels are which color after they are imported as grayscale. We have set up a web-based forum for ImageJ: It is driven by Discourse, an awesome project designed by one of the founders of StackOverflow, and utilizing some of the same concepts. The new Label Splitter for 2D and 3D images as alternative Purpose: The standard watershed algorithm in ImageJ is very usefull to separate connected, roughly circular structures. The best I could do was to import the image with activated "Split channels" option and subsequently merging pairs of 3 into composite images using ImageJ's "Image->Color -> Merge channels." functionality. While the import did work in principle, I could not maintain the RGB-ness in any sensible way. The mentioned shortcut syntax with & does not work between square brackets in the option string. For examples, see the ArgumentPassingDemo macro. I tried importing an image with multiple RGB channels (4 RGB channels, 12 channels total) using the Bioformats Plugin for ImageJ. With ImageJ 1.43 and later, variables can be passed without using string concatenation by adding '&' to the variable name. Installing JACoP - Usage & Issues - Image.sc Forum Installing JACoP Usage & Issues fiji GopherConfocal (Mary E Brown) March 24, 2020, 11:55am 1 Hello, When I save the JACoP plugin as an executable jar file to my plugins folder in FIJI, JACoP does not show up in my list of plugins once I start FIJI.
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